Comprehensive Mango Pangenome Resource
MangoPanBase provides high-quality datasets, analysis results, and interactive tools to accelerate mango pangenome research.
🧬 Our Pangenome Construction
Constructed using 4 mango cultivars: Alphonso, Amrapali, Neelam, and Dashehari, and 36 whole-genome and resequenced datasets (24 in-house resequenced + 12 public datasets).
Combined sequence-based pangenome assembly size: 394.43 Mb.
Achieved a high-quality, highly contiguous assembly with N50 of 17.65 Mb.
📊 Pangenome at a Glance
MangoPanBase delivers a highly contiguous, gene-complete mango pangenome, enabling rapid exploration of core, dispensable, and cultivar-specific genes through integrated analyses and an interactive genome browser.
🌐 Pangenome Browser
The Interactive Mango Pangenome Browser enables comprehensive genome exploration with integrated tools:
- Visualizes gene distribution, core and dispensable regions, orthogroups, and annotations across cultivars
- Supports comparative analysis of core, dispensable, and cultivar-specific genes
- Provides integrated functional annotations (GO, KEGG, PFAM, COG) for downstream research
Contact
For questions, please contact the MangoPanBase team.